Sentence examples for calculates alignment from inspiring English sources

k-mer searches were on average 860 times faster than blastx because the k-mer approach neither extends the matches nor calculates alignment statistics for the resulting matches.

By expressing the structural information in Spherical Harmonics (SH) Expansion, it is possible to formulate the rotational alignment as a fast rotational matching, which simultaneously calculates alignment scores of all rotations using FFT.

On the other hand, Novoalign first finds candidate alignment positions from the reference genome for each read, and calculates alignment scores for these positions using the Needleman-Wunsch algorithm, based on base qualities, the existence of gap, and ambiguous codes (Ns).

Moreover, an equation used to calculate alignment parameters of the segmented parabolic mirror is presented following the same idea.

Likewise, a FN is a pair in the correct alignment not present in the calculated alignment.

The software's default settings were used to calculate alignment scores.

We calculated alignment scores by assigning a value of 1 for identical residues, 0.5 for a positive alignment score in the BLOSUM62 scoring matrix, and 0 for non-positive BLOSUM62 scores or a gap.

Maps of the a1 and a2 mating-type chromosomes were compared to each other with the MapSolver software (OpGen) to calculate alignment scores based on a cumulative scoring function that rewards matching cut sites and penalizes mismatch or missing sites.

We score calculated alignments against the correct alignments generated during the evolution process.

However, calculating alignments between genomes can be cumbersome for two reasons.

Specifically, to calculate alignments 'PROmer' program with the 'maxmatch' option was used.