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Although correlation of the expression of orthologous AP genes in grape and Arabidopsis was not calculated, the method of combining synteny analysis with the phylogenetic tree may provide a new approach for investigating gene function from their orthologs whose functions have been previously clarified.
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Magnitudes were calculated by the method of Watanabe (1971).
Empirical charges were calculated with the method of Gasteiger [17].
Vertical symmetry is calculated using the method in [39].
Regression lines were calculated by the method of least squares.
Thresholds were calculated using the method presented by Piepho (2001).
Dominance index was calculated following the method described in [ 24].
Relative gene expression was calculated by the method.
Relative SIRT1 mRNA expression was calculated using the method.
Expression levels were calculated by the method (32).
Aliphatic index was calculated using the method of Ikai [ 36].
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