Sentence examples for calculated the alignment from inspiring English sources

The Ka/Ks Calculator Tool calculated the multiple sequence alignment and the phylogenetic tree from these input sequences, translated the DNA-sequences to protein, calculated the alignment, transformed it back to DNA, and aligned it on codon boundaries for Ka/Ks calculation.

(ii) We calculated the alignment length percentage between the query and subject.

Though demonstrating previous promising performance, we observe that these algorithms may suffer from the approaching in calculating the alignment.

10 1 D CH (Table S3, Electronic supplementary material) were extracted from the spectra and they were used to calculate the alignment tensor for each possible conformation using the SVD method [22].

The program MODULE was used to calculate the alignment tensor from the CXCL12α molecular shape and evaluate the correlations between experimental and backcalculated RDCs [40].

Acceptable (or "mapped") alignments were distinguished from rejected (or "unmapped") alignments by calculating the alignment score for each sequence.

Depending on the requirement, the node-based or edge-based weights are used in calculating the alignment score [ 8].

At the second step, we calculate the alignment score for each pair of nodes of the input networks.

To calculate the alignment between spikes and LFPs, we computed the LFP phase in theta band for each spike.

As we know the exact coordinate of each read, we are able to calculate the alignment error rate.

The additional computational time and complexity required to calculate the alignment distribution may reduce BigFoot's practicality for these datasets.