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The calculated site preference energies show that there are three site preference behaviors for PGMs additions in γ′.
In terms of calculated site energies, this site could be partially occupied.
For the simultaneous comparison of n clades, the Probability of Identical Profiles (PIPn) is calculated site by site without any affiliation stability conditions.
To ensure the sample proportions of urban and rural (including nomad) reflected those estimated in the population, we calculated site weights and applied these when calculating district estimates.
36 We calculated site- and sex-specific, age-adjusted rates stratified by the 4 poverty categories, both stratifying and adjusting for race/ethnicity.
We compared the proportions that lived in rural communities, urban communities, and the capital (Gaborone) in the sample population and the census population and calculated site weights to allow for differences in distribution between the sample and actual population.
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Then, the calculated site-specific cross-correlation and spatial correlation are included into the proposed 2D correlated random shadowing model by applying the method of Fraile et al. in [8].
We examined longitudinally the pattern of activities over the whole process in each site and calculated site-specific descriptive statistics.
Constrained and unconstrained maximum-likelihood trees were inferred using RAxML 8.0 (Stamatakis 2014), and calculated site-likelihood values were used as input for CONSEL (Shimodaira and Hasegawa 2001) to calculate P values of the Kishino–Hasegwa test and the approximate unbiased test (Shimodaira 2002) (supplementary table S1, Supplementary Material online).
To evaluate possible systematic biases caused by fast-evolving sites in our alignment, we calculated site-specific substitution rates for our concatenated data set and progressively removed the fastest-evolving sites to retain a minimum percentage length (95%, 80%, and 70%) of our 14-protein original alignment.
Current practice in calculating site response for safety-related nuclear applications mainly involves the equivalent linear method in the frequency-domain.
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