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Calculated based on the formulas presented in the Appendix Relationships were calculated for pairs of half- and full-sibs, using either pedigree or SNP information.
The spike count correlation coefficient (rsc) was calculated for pairs of neurons during the time window of visual stimulation (temporal duration 2 s) as follows.
However, since test similarity is calculated for pairs of test cases, we also defined the RBAC Applicability Value (AppValue) which sums the applicability degrees of test cases (Eq. 6).
To study the evolution of the genes within the aflatoxin gene cluster, Ka/Ks ratio was calculated for pairs of orthologous genes between non-aflatoxigenic genotypes and toxigenic A. flavus AF13.
The correlation coefficient was calculated for pairs of ROIs (Figure 9C).
Fold-changes in gene expression (right axotomy/left control) were calculated for pair-wise comparison using the GEArray Expression Analysis suite.
Jaccard's similarity coefficients were calculated for pair-wise combinations of all the genotypes and a dendrogram was constructed to resolve the members of the primary, secondary and tertiary gene pools in the two main groups.
The spontaneous activity correlations were calculated for pairs of cells sharing the same activity peak timing.
r2 values were calculated for pairs of SNP (MAF > 0.05) located within coding OR exons.
Reproducibility was assessed using an intraclass correlation coefficient, and effect size was calculated for paired variables.
For longitudinal expression studies the difference of STI post-therapy and pre-therapy was calculated for paired samples.
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