Sentence examples for calculated by programs from inspiring English sources

In the final structural models helix h3 critical for recognition with DNA adopts a 310 helix in both res-RolR and apo-RolR calculated by programs Procheck and DSSP, which is different from that observed as an α helix in other TetR members.

For identification of the capacities, the electric fields calculated by program quickfield are used.

Tm and ΔG are calculated by program SLICSEL.

The pairwise identity and similarity of proteins were calculated by program MatGAT v2.02 (http://bitincka.com/ledion/matgat/).

The pairwise identity and similarity of sequences were calculated by program MatGAT v2.02 (http://bitincka.com/ledion/matgat/).

The values of these molecular descriptors were calculated by program ChemAxon which is available for computing the molecular descriptors [ 31, 32] (see supplemental material IV).

The volume of the cavity (451 Å, calculated by program CASTp [ 35]) appears large enough to accommodate monophenolic or diphenolic substrates such as tyramine and dopamine (approximately 190 200 Å).

The program also recognises distance matrices calculated by other programs from other components of sequence data, such as evolutionary distances calculated from pair-wise sequence comparisons.

Consel compares likelihoods, but the likelihoods calculated by the programs RAxML and GARLI, which were used to generate topologies and estimate models, are not directly comparable [84], [85].

An additional advantage of HMM profiles is that the statistical significance of hits (the expected value) is much more accurate than that calculated by BLAST programs.

PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.