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To account for the biases inherent in GO, namely over representation of model species, coverage was calculated as a comparison between the absolute coverage of the An.
Values are calculated as a comparison to the untreated groups.
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The activity of samples was calculated as a percentage in comparison to a control (DMSO or MeOH instead of sample solution) according with the following equation: Inhibition = left( (Delta ;A_{control} - Delta; A_{sample})/{Delta ;A_{control} } right) times 100;%.
The amount of positive cells was calculated as a percentage in comparison to the isotype control.
In order to make meaningful interpretations in a background of natural variability in surface area and volume, MCD was calculated as a metric for comparison of cells.
The extent of positive staining was calculated as a percentage in comparison with the isotype control staining, set at the 1% level.
Odds ratios for the specific features for detecting repair in comparison with progression were calculated, as well as the sensitivity, the positive predictive value, the specificity, and the positive and negative likelihood ratios of these features.
These relative weights within each level of hierarchy structure are regarded as local weights in this study and can be calculated as a method of pair-wise comparison using 9-point intensity defined in AHP theory mentioned in previous Sect.
Cell viability was calculated as a percentage of absorbance in comparison with untreated cells.
Fold change ratios of gene expression comparisons were calculated as a mean of duplicate spots.
Percentages are always calculated as a decimal.
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