Sentence examples for calculated accessible from inspiring English sources

In order to recognize the radius of the probe sphere that is appropriate for the structures with only Cα positions available we have calculated accessible surface area values of Cα atoms for the entries in the dataset of Cα-only structures using a series of probe of radii namely (in Å), 2.1, 2.5, 3.0, 3.4, 3.5, 3.6, 3.8, 3.8, 4.0.

During the fitting process a heat capacity (Δ C p ) of 3.1 kJ/(mol K) was used based on calculated accessible surface areas of the folded and unfolded Ubl domain.

As mentioned in the Protocol section various radii for the probe sphere have been used to calculate accessible surface areas of Cα atoms.

Additionally, ABC may be able to heighten the awareness of medical personnel regarding costs by calculating accessible activity costs.

To 'quantify' accessibility, we calculated Solvent Accessible Surface Area or SASA [29].

To further identify the residues taking part in the interaction, we have calculated the accessible surface area (ASA) of the amino acid residues.

Feeding trough length was measured and calculated as accessible trough length per animal.

To this end, we calculated solvent accessible surface areas (SASAs) with probes of different radii in the MD trajectories of all the simulations: STX in PM, STX in POPC membranes, and the lysine to alanine mutant, STXK2A, in PM (see Methods).

Surface atoms were determined by calculating accessible surface areas (>0 Å2) at 1.4 Å of probe atoms.

Perhaps, the error introduced in side chain predictions/modeling is carried forward in the recognition of buried residues, which is successfully avoided in the proposed approach by calculating accessible surface areas for Cα positions only.

NACCESS [35] program has been used to calculate the accessible surface area and accessibilities.