Sentence examples for calculate pathway from inspiring English sources

More recently, [ 38] described an algorithm, Pathifier, which uses expression data to calculate pathway deregulation scores.

Rank normalizations provide robust summary statistics to calculate pathway expression scores [ 6, 13] that can be applied across all technologies, and does not depend on the dynamic range of an array.

Details of Figure S3: Pathway expression of canonical KEGG signal transduction pathways [ 21] were measured as the normalized mean of the pathway components and subsequently used to calculate pathway perturbation between BC subtypes (see Additional file 4).

Advanced methods calculate pathway-level statistics.

Instead, it can be used iteratively to calculate pathways of increasing length, which results in a dramatic improvement in performance for finding relevant pathways in large networks.

It is convenient for its focus on short pathways and the fact that it can calculate pathways that comply with the steady-state constraint.

The main advantage to calculating pathway activities on top of pathway consistencies is that activities can be calculated even when there is not enough data to work with the output, as is the case, for example, when the interaction is based on activating or modifying molecules without the generation of a novel molecule as output.

The pathway activity profiling (PAPi) algorithm (13) was employed for calculating pathway activity based on metabolomic data.

To further measure the quality of structurally inferred interactions, we calculated pathway and functional distances between interacting proteins.

Further, by calculating pathway activation of AKT, PI3K and p53 in the mouse tumors, the AKT pathway was strongly induced in PTEN/p53 deficient tumors.

We next assessed the impact of Pten/p53 deletion on PI3K/AKT signaling by calculating pathway activation for AKT, PI3K and p53 (Gatza et al, 2010).