Sentence examples for by various computational methods from inspiring English sources

These primarily involved post-hoc functional analyses such as T-test, ANOVA [22] or clustering analyses [23] (i.e first finding lists of changed genes, by various computational methods, and then conducting functional enrichment analysis on these lists, e.g. EASE [24] and MAPPFinder [25]).

Experimental results with yeast protein interaction data show that the interaction subgraphs discovered by various computational methods matched well with actual protein complexes.

We used a slightly more general definition of a canonical seed match to account for different types of canonical seed matches that are considered by various computational methods.

Also, high-confidence PPIs predicted by various computational methods can focus future experiments and reduce their false positives and false negatives (Kotlyar and Jurisica 2006; Kotlyar et al. 2011).

The classification of the coreceptor usage has been developed by using the various computational methods or genotypic algorithms based on V3 amino acid sequences.

Various computational methods address a broad spectrum of problems in functional genomics and cell physiology.

These results are often used to derive parameters for various computational methods.

Various computational methods were used to identify drug targets for the most studied strain of TB, Mycobacterium tuberculosis H37Rv.

Among various computational methods, molecular dynamics (MD) simulation is widely used in studying protein dynamics (Dror et al., 2012).

The problem of inter-method reliability is concerned with the degree of agreement between the various computational methods and with the predictive performance of each algorithm.

Various computational methods have been proposed for the identification of metabolites from tandem mass spectra.