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The initial set of genes extracted from each source will be further extended from a source specific network, once by utilizing a microarray based network and the other by utilizing a text-mining based network, by including their direct neighbors for further analysis.
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More recently, studies by Woodfine et al. [ 18, 19] confirmed the cytogenetic data, utilizing a microarray approach.
We conducted the search for polySia-NCAM and NCAM by utilizing a tumor tissue microarray (TMA) of the 36 paraffin-embedded neuroblastoma samples, as described earlier [ 24].
In this study, we followed Chang et al. [ 15] who established an effective mouse model of oral cancer and used this model to identify potential markers of oral tumor progression by utilizing a noncommercial methylation microarray.
We explore the consistency of RT-PCR expression data with microarray expression by utilizing a dataset where both RT-PCR and microarray profiling data is available for the same miRNA samples.
In this paper, we report an integrative analysis linking HF gene expression and PPI network data by utilizing a publicly available ICM-related microarray data set [5].
Moreover, while a previous report by Pufky and associates had utilized a microarray of dicamba treated plants, it did not contain a detailed examination of dicamba-regulated genes, and instead the array data was used to compare overall expression patterns between different classes of auxinic herbicides 20 minutes after their application [32].
In lieu of this, we utilized a microarray study published by Lory and colleagues (∆ retS vs wild-type) in order to generate a list of proteins under Gac/Rsm control.
One recent approach utilized a microarray representing characterized murine imprinted loci to highlight the tissue specific variability of DMRs [ 27].
Hence, in our modeling approach, we have captured the effect of temporal changes in transcription and protein levels by utilizing the microarray data with a three hour time delay as an input to the model.
Overexpression of Mcl-1 was found in malignant melanoma compared to benign nevi and increased expression of Mcl-1 was also observed by comparing primary and metastatic melanoma samples utilizing a tissue microarray [ 6].
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