Sverdlov et al. [ 18] constructed a dynamic model of intron insertion by using a weight matrix for the proto-splice sites and inserting introns with a probability proportional to the weight matrix score.
Therefore, by using the Weight Matrix, it is possible to calculate the cosine of the angle between the vectors of terms, which are representative of the documents, to define the distance between them.
Second, by using different weight matrices, we confirm the existence of strategic interactions in relation to R&D spending among European countries with similar economic, international trade and sectoral structure characteristics, though not geographically close.
By using the weight matrices, a specific score can be calculated for any segment of the matching size, based on its nucleotide sequence.
By using positional weight matrices (PWMs), which is the most widely used method for recognition of transcription factor binding sites, we identified different mechanisms by which c-Myc putatively mediates its tumorigenic actions (see Figure 2): 1) Putative direct actions in part in cooperation or competition with other transcription factors.
By using free weighting matrices, free-connection weighting matrix method and convex combination approach, sufficient conditions for the existence of L2−L∞ filters are expressed in terms of linear matrix inequalities (LMIs), which can be solved by using Matlab LMI control toolbox.
WPCA is a special variety of PCA in which data points are weighted proportional to the measurement accuracy at those points by using a weighting matrix [ 34].
This proposed algorithm modifies the block LMS source localization algorithm [1] to robustify the block LMS algorithm against outliers by using a weighting matrix which is given as the inverse of the square error or an exponential function with a negative exponent.
Forni et al. (2011) gave a possible solution, using weighting of the genomic relationship matrix by the A matrix to eliminate singular matrices, if the number of loci is limited or two individuals have identical genotypes across all markers.
Briefly, for every possible binding site pair in a specified range and preceded by T within the given sequence, binding score (lower-the-better) is calculated using the weight matrix developed by Moscou and Bogdanove (Moscou and Bogdanove, 2009), and best-scoring TALEN sites as well as the RVD sequences are displayed.
