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By using the crystal structure of HSP90 ligand complex (1uyi), a docking model was prepared and was validated by external dataset containing known HSP90 inhibitors.
One of the possible models of this epitaxy structure, which matched its X-ray diffraction patterns well, has been deduced by using the crystal structure proposed in a previous paper.
The standard way of modeling plasticity in polycrystals is by using the crystal plasticity model for single crystals in each grain, and imposing suitable traction and slip boundary conditions across grain boundaries.
Starting with a barren town consisting of a lone castle and a large power crystal, by using the crystal's power the player can magically place a variety of buildings to populate the settlement and draw in residents.
The modeled BCCP domain was docked manually onto the subunit A of dhMtb-BirA by using the crystal structure of BirA and BCCP complex from P. horikoshii OT3 (2ejf) as a template.
A 3D structural model of medaka AChE was built by using the crystal structures of H. sapiens BChE (pdb code 1p0i), T. californica AChE (pdb code 1ea5) and D. melanogaster AChE (pdb code 1dx4) as structural templates.
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The calcite crystals for both vein samples started to grow from the surface of the vein wall by using the crystals along it as seed crystals (i.e., syntaxial growth) as the extension fractures opened.
A solution of potassium permanganate is generally made at home by using the crystals that are readily available and cheap (authors' personal communications).
It was found that some HDT molecules stood on the gold electrode and some molecules lay on the electrode by using the quartz crystal microbalance (QCM).
This family of host molecules was found to bind much more favorably with (R -methyl lactate than with its (S)-enantiomeR -methylalactatelow analythanoncentration, by using the quartz crystal microbalance (QCM) method, and thus render it as a good newithnditste for chiral gaS -enantiomeringS -enantiomer
In the present study, by using the ASIC1 crystal structure [5] and solving the linear Poisson-Boltzmann (LPB) equation, the protonation probabilities of all the titratable sites identified in the crystal structure (51 Arg, 75 Asp, 101 Glu, 73 Lys, 72 Tyr, 15 His, and 3 pairs of N/C-terminal residues) were calculated.
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