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By using the count of IBS-0 SNPs as a proxy for genotype diversity we concluded the YRI group had the greatest genetic diversity between the sampled "unrelated" individuals.
The p27-positive nuclei were counted in each image by using the count tool in Adobe Photoshop CS6 Extended and were expressed as a percentage of total nuclei present (represented by DAPI-stained nuclei).
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The count for the scattered events in I-main is corrected for by using the counts for the I-lower, I-main, and I-upper windows.
Admission to an ETU was a binary time-dependent variable entered into the model by using the counting process method.
The heuristics try to determine if two-subcontigs are from the same transcript by using the counts of the 5', 3', un-complemented and complemented ESTs.
Proportions were calculated by using the counts of patients recorded in the ETR with a given outcome as the numerator divided by the total number of patients in the ETR with a final treatment outcome recorded.
Seurat detects point mutations by using the counts of aligned bases that support a variant genotype (e.g. A non-reference nucleotide or insertion/deletion evidence), versus the total number of aligned bases.
Then a factored HMM in which the hidden variable has values drawn from the Cartesian product = [ C1] × ··· × [ C m ], where [ C l ] is the set of equivalence classes of cluster C l generated by using the counting partition, satisfies Condition II.
Then a factorial HMM in which the hidden variable has values drawn from the Cartesian product = [ C1]× ··· ×[ C m ] × F, where F is some fixed state space, [ C l ] is the set of equivalence classes of cluster C l generated by using the counting partition, satisfies Condition II.
Mitochondria were counted by using the point counting method by using a grid system to count the number of mitochondria present in a given image relative to cytoplasmic volume [ 7].
Five random fields of view were captured per transwell insert, and the number of cells that had migrated to the bottom side of the membrane was counted by using the particle counting module of ImageJ after size and pixel intensity thresholding.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com