Moreover, solid-state lighting systems like flexible fluorescent films and plates have been demonstrated by using the CD powders as the luminescent medium.
In order to remove the homologous peptides in resulting datasets, a cut-off threshold of 90%% was imposed by using the CD-HIT programme [ 122].
Reduced alignments containing sets of representative sequences of less than 90% identity were obtained by using the CD-HIT suite [ 66].
To reduce homologous bias, J-proteins that have ≥40% pairwise sequence identity to each other were removed by using the CD-HIT program [ 16].
By using the CD profile as a query, we detected 796 BY-kinases homologs (fig. 1 and supplementary table S2, Supplementary Material online) and as their name indicated, all of them were found in bacterial genomes but not in Archaea.
The predicted genes in the eggplant genome together with those in the tomato (ITAG2.3, 34,727 genes), potato (PGSC DM v3.4, 56,218 genes), tobacco (Niben.v0.4.4, 76,379 genes), and A. thaliana genomes (TAIR10, 35,386 genes) were clustered by using the CD-hit program with the parameters c = 0.4 and aS = 0.4.
The putative genes of I. trifida were clustered by using the CD-hit program with the unigene sets of potato (http://potato.plantbiology.msu.edu/index.shtml) (S. tuberosum, PGSC DM v3.4, 56,218 genes), cassava (http://www.phytozome.net/cassava.php) (Manihot esculenta, v4.1, 34,151 genes), and A. thaliana (http://www.arabidopsis.org) (TAIR10, 35,386 genes) with the parameters c = 0.4 and aS = 0.4.
The use of the carbon fiber modified with β-CD gave relatively high dl selectivity of the reductive coupling products 2 (the dl/meso ratio: 5.2), while the dl/meso ratio using the untreated carbon fiber was 3.0, and the formation of 1-phenyl ethanol (3) was observed only by using the β-CD-modified carbon fiber.
Multivariable models were constructed for the prediction of all-cause death in OSCC patients by using the combined CD cohort as the discovery cohort, and the GD cohort as a validation cohort.
The conserved protein motifs were identified by using the Batch CD-Search, a Conserved Domain Database (CDD) web tool from the NCBI database (http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi; [ 41, 42]).
The best hit for each pigment gene was chosen as a candidate to test for the presence of conserved domains by using the Batch CD-Search tool (Marchler-Bauer and Bryant 2004) to search against the Conserved Domain Database (Marchler-Bauer et al. 2014).
