Sentence examples for by using the alignment from inspiring English sources

Many of these cases could be discerned in advance by using the alignment quality measures presented in Section 2.2.4.

A result image of adjusted alignment is demonstrated to show the reduced discrepancy by using the alignment measurement method.

The three-dimensional structure of target protein was predicted by using the alignment file in MODELLER software [ 16] whereby predicted structure was returned.

Full-length 16S rRNA gene sequences (> 1300 bases) were added to an ARB alignment of about 28,000 small-subunit rRNA sequences by using the alignment tool ARB_EDIT of the ARB program package [ 37].

Subsequently, this information was collected and, by using the alignment to track the same position on different kinase-substrate structures, the minimum distance for each alignment position was obtained.

The sequences of the amplified products were characterized by sequencing genome position 1402-1656 of the envelope glycoprotein as described (23) by using the alignment algorithm Clustal W. Serum samples from 12 of the 14 diseased horses were available; the remaining 2 horses had died without having blood samples taken.

The time to align the homologs to the query might be reduced by using the alignments implied by the families as a starting point to search for local alignments, instead of using BLAST to realign the homologs to the query.

We do this by using the alignments of the references to q and d j.

For instance, we could transfer functional annotation concerning the Wnt pathway between the human and fly networks by using the alignments we obtained.

"MAKER" (Cantarel et al. 2008) was used to construct an improved gene model for the genomic region which contained the TRP-N locus by using the alignments of the TRP-N proteins of Xenopus tropicalis, D anio rerio, D. melanogaster, and Caenorhabditis elegans.

The ancestral variant was identified by parsimony using the alignment with the comparison species.