Sentence examples for by using simulated alignments from inspiring English sources

Accounting for bias by using simulated alignments is a better alternative than using a model in which no bias is assumed.

We used simulated alignment data to guide the design of our ncRNA discovery pipeline and estimate the corresponding false-positive rate.

We compare DACTAL to SATé and maximum likelihood trees on estimated alignments using simulated and real datasets with 1000 27 643 taxa.

Through exploratory analysis using simulated data and profile-profile alignments, we have found that these locally optimal profile models often align with the correct profile (from which the data were simulated) after local shifts of the model positions.

We compared methods for alignment extension using simulated data representing a mammalian gene family (Fig. 3a).

We have compared RRBSMAP with three other alignment programs using simulated and real data, and the results are presented in Supplementary Tables S1 and S2 and Figure S2.

We used simulated data to evaluate the accuracy of read alignment and transcript abundance estimation.

LoQuM uses statistics on the read (base quality scores reported by the sequencer) and the alignment (number of matches, mismatches and deletions, mapping quality score returned by the alignment tool, if available, and number of mappings) as features for classification and uses simulated reads to learn a logistic regression model that relates these features to actual mapping quality.

The DOE used simulated and sampled data.

To verify the significance of the results, we performed the same analysis with the 10 simulated alignments obtained by using a posterior predictive approach for the mtp336 dataset, as described above.

Posterior samples of gene trees, for both simulated and real alignments, were downloaded together with the 'true' gene trees used to simulate alignments from the dryad data repository (doi 10.5061/dryad.pv6df) provided by Szöllősi et al.