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The web interface to the database is not just a collection of simple tables showing the data, or a simple query to search by using sequence identifiers or keywords.
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A custom QuantiGene® gene expression array (Affymetrix, Fremont, CA) was designed by Affymetrix using transcript sequence identifiers matching probes of interest provided by the authors.
miRNA microarray probe identifiers were mapped to miRBase [ 41] (release 12) mature and hairpin miRNA identifiers using sequences supplied in the Il-lumina plannotationotation file.
Unique identifiers between template sequence and target sequence were compared to determine homology within the sequence by using multiple sequence alignment available in Command Line Calculator (CLC) drug discovery workbench.
For subsequent phylogenetic analyses the putative origins of contig sequences were assigned using the sequence identifier (gi) numbers of the top hits determined by megablast [ 59, 60] (available online [ 61]) against the NCBI non-redundant database (E-value <0.001).
It seeks to create a "virtual border" around the United States by using biometric identifiers for travelers and other new technology to bolster security.
This disadvantage can be overcome by using InChI identifiers.
For instance, a data source with the Entrez Gene identifier system may be queried for interactions by using gene identifiers, another data source with the UniProtKB identifier system by using protein identifiers.
Participants' anonymity was maintained by using anonymous practice identifiers.
By using specific gene identifiers and accession numbers, Blast2GO produces GO annotations as well as corresponding enzyme commission numbers (EC) for sequences with an E-value ≤1e-5.
By using specific gene identifiers and accession numbers, Blast2GO produces all GO annotations as well as corresponding enzyme commission numbers (EC) for sequences with an E-value equal to or less than 10-6.
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