Sentence examples for by using sequence annotations from inspiring English sources
The present study compared gene coverage by using sequence annotations equivalent to public accession numbers available for 29,195 probes.
This was done by using the sequence annotation to assess whether there are additional B. rapa BAC clones overlapping and confirming the discontinuity.
Third, we extend our design by combining the SVM-based predictions with annotations generated using sequence alignment.
Two data quality issues are immediately encountered when using sequence data produced by others and from several different researchers: genome annotation and sequence quality.
The gene annotation was performed by using the automated sequence annotation system RUMMAGE [ 49] and ANA_NOTES, SPANDIT and LACE as a local client of the HAVANA pipeline at the Sanger Institute (Hinxton, UK; [ 21]. Detailed descriptions of the analysis tools are given by [ 50] and [ 51]. Genomic DNA was extracted from the blood of four male volunteers using the QIAamp DNA Blood Kit (Qiagen).
WGS contigs containing DNA from the aby gene cluster were identified by BLAST searching, and were manually annotated by using Artemis sequence visualisation and annotation software 35 and BLAST search tools.
By use of sequence annotation via blastn with a matching criterion of at least 1e-30, there were 217 fiber initiation, 264 fiber elongation, 14 SCWD, and 214 non-fiber unigenes anchored to chromosome 12 (Additional file 5).
A flowchart of our in silico strategy used to elucidate the c-Myc regulatory network is depicted in Figure 2. By using their RefSeq annotation, 361 promoter sequences could be extracted from the UCSC Genome Browser for the 469 upregulated genes.
Virtual properties are declared by using OWL annotation properties.
Their gene structures were then manually constructed both by using annotation (if available) and by aligning their sequences with those of other species.
