Sentence examples for by using sequence alignments from inspiring English sources
Here, by using sequence alignments, structural modeling, combinatorial mutagenesis, and recombinational rescue, we replaced all nine cysteines of gp17 and introduced single cysteines at defined positions.
Phylogenetic trees were constructed by using sequence alignments, and a neighbor-joining tree was built under a Poisson correction substitution model assuming uniform rates of substitutions among sites.
The 1,216 nucleotides generated partial sequences of the JEV E gene that were compiled by using Sequence-Alignment Editor software version 2.0a11 (A. Rambaut, Department of Zoology, University of Oxford, Oxford, UK); pairwise genetic distances were calculated with MEGA software version 2.0 (9 ) (Table 2; Figure 2).
Instead it exploits information on sequential and structural similarity directly by using sequence-structure alignment.
Unique identifiers between template sequence and target sequence were compared to determine homology within the sequence by using multiple sequence alignment available in Command Line Calculator (CLC) drug discovery workbench.
We identified conserved regions by using multiple sequence alignments of AstV-MLB1 amino acid sequences to all fully sequenced astrovirus genomes.
To overcome the time consumption of Smith Waterman algorithm, Lipman and Pearson proposed FASTA tool in 1985, which takes a given nucleotide or amino acid sequence and searches a corresponding sequence database by using local sequence alignment.
Both sensitivity and specificity can be dramatically improved by using multiple sequence alignments as queries.
ERPIN (Easy RNA Profile IdentificatioN) is an algorithm used to define RNA motifs by using multiple sequence alignments and secondary structure consensus.
Sequences were compared by ClustalW alignment algorithm by using BioEdit Sequence Alignment Editor (www.mbio.ncsu.edu/BioEdit/bioedit.html).html
Comparison of the 18S rRNA gene sequences of these isolates with 22 other published reference sequences, derived from a variety of human and animal Cryptosporidium isolates by using multiple sequence alignment and phylogenetic analysis, showed that the 11 isolates fell into four main groups.
