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We tried to minimize spectrum bias by using relatively liberal inclusion criteria.
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However, we will show that Lampinen reached an erroneous conclusion because he simulated data using relatively liberal criterion locations and inappropriately applied signal detection equations from a different decision task.
Despite evidence for multiple recruiters, over 40% of Tup1 genomic targets were not bound by a known recruiter, even when using a relatively liberal cutoff (P<0.01).
With E-value = 1 × 10-8, only 34% of the 13,765 members of BmiGI can be assigned one or more GO terms using this relatively liberal Blast E-value.
Thus, 66% of the members of BmiGI could not be assigned GO annotation, even using a relatively liberal E-value in the Blast.
We used a relatively liberal threshold of p < 0.01 voxel-level uncorrected (cluster size k > 140 voxels) to create ROIs for the following MVPAs.
Early in an investigation, it would make sense to use a relatively liberal criterion.
We used a relatively liberal E-value cut-off, however, and, in some cases, the percent coverage of the subject sequence by the candidate gene sequence was relatively low, suggesting caution when these sequences are used in candidate gene studies.
Although we used a relatively liberal FDR < 0.25 to identify the > 320 noncoding ceQTLs, the number of true noncoding ceQTLs is still expected to be ~240.
We used this relatively liberal threshold to maximize the inclusion of true differentially expressed genes in BP that may not always be among the most significant findings, at the risk of including some false positive associations.
Family planning was free and used relatively widely by 58% of women (pdf).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com