Sentence examples for by using phylogenetic network from inspiring English sources

However, incongruence resulting from genealogical discordance processes must be detected and handled in some appropriate ways, e.g., by using phylogenetic network inference methods [see [ 48] for a review].

Consequently, evolutionary relationships between species whose past includes reticulation can often be better represented by using phylogenetic networks rather than trees [ 65– 65].

Using phylogenetic networks, we analyzed whether the M. leuckarti position in the ITS1/ITS2 cladogram was caused by different contributions of ITS1 and ITS2 sequences to the phylogenetic signal.

We accounted for potential confounding effects such as phylogeny, founder effect and multiple comparisons by using phylogenetic dependency networks [31] - an approach which reports associations between specific viral polymorphisms and HLA Class I alleles according to p value, q value (a measure of false positive error) and a phylogenetically-adjusted odds ratio.

A multilocus haplotype network was generated using phylogenetic algorithms with migration [ 51].

Using phylogenetic and multivariate statistical analyses, we characterize Max and Mlx network interactions in animals by comparing the bHLHZ domain of its members across diverse species.

Additionally, we estimated the population structure using a phylogenetic network depicted by the SplitsTree4 version 4.13.1 (Huson and Bryant 2006).

In addition, we used a phylogenetic network to describe the relationship of the HIV sequences and to detect recombinant sequences.

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Why do we use phylogenetic trees?

Phylogenetic relationship was assessed by using 3 approaches: Bayesian phylogenetic trees, neighbor-joining, and split network.