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Both sensitivity and specificity can be dramatically improved by using multiple sequence alignments as queries.
Finally, the classified families were verified by using multiple sequence alignment of LTRs and IRs.
We identified conserved regions by using multiple sequence alignments of AstV-MLB1 amino acid sequences to all fully sequenced astrovirus genomes.
ERPIN (Easy RNA Profile IdentificatioN) is an algorithm used to define RNA motifs by using multiple sequence alignments and secondary structure consensus.
Unique identifiers between template sequence and target sequence were compared to determine homology within the sequence by using multiple sequence alignment available in Command Line Calculator (CLC) drug discovery workbench.
Comparison of the 18S rRNA gene sequences of these isolates with 22 other published reference sequences, derived from a variety of human and animal Cryptosporidium isolates by using multiple sequence alignment and phylogenetic analysis, showed that the 11 isolates fell into four main groups.
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The coevolved mutation analysis by PSICOV using multiple sequence alignment generated by PSI-BLAST and machine learning-based algorithm outputs are combined to generate the final predictions.
By studying a protein family using multiple sequence alignments and statistical coupling analysis, we attempted to determine if it is possible that these groups of residues could be related to disease phenotypes.
The sequences were aligned using multiple sequence comparison by log-expectation (MUSCLE) [48].
Sequences from either AA9 or AA10 families were aligned using Multiple Sequence Comparison by Log-Expectation (MUSCLE) on the Cyberinfrastructure for Phylogenetic Research CIPRESS, https://www.phylo.org/portal2/login!input.action) Science Gateway [ 48].
Sequences were aligned using Multiple Sequence Alignment by CLUSTALW http://align.genome.jp/, and evaluated for variant nucleotides between 'Williams 82' reference http://www.phytozome.net/soybean and the PIs.
More suggestions(15)
by using multiple time
by using simple sequence
by using multiple operating
by using hierarchical sequence
by conducting multiple sequence
by using spatial sequence
by using multiple water
by using multiple linear
by using full sequence
by performing multiple sequence
by using multiple PEs
by constructing multiple sequence
by using genomic sequence
by using multiple regression
by using multiple radioligand
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