Sentence examples for by using maximum parsimony from inspiring English sources

Phylogenetic trees implemented by the SeaView and Phylo_win program [ 27] were constructed by using maximum parsimony and the neighbor-joining method with 500 bootstrap replicates.

In many recent studies, RGCs have been employed to infer phylogenetic trees, typically, by using maximum parsimony [ 3, 4, 6, 10].

Thus, we sought additional evidence to support the reliability of our subfamily designations by using maximum parsimony (MP) analysis to generate a MP tree (Additional file 4).

Phylogenetic analyses were performed on the computational cluster of the College of Biology and Agriculture at Brigham Young University by using maximum parsimony and Bayesian Markov chain Monte Carlo approaches.

Human miRNAs' ages were inferred by using maximum parsimony criterion, which requires that the miRNA family should have the least evolutionary changes (gains and losses) along the phylogeny tree.

Phylogenetic analysis was carried out on the multiple nucleotide and amino acid sequence alignments by using maximum parsimony (PAUP* version 4.0b4a Macintosh computer software programs) (28 ) and the distance-based neighbor-joining method.

Phylogenetic trees are built by the PHYLIP using maximum parsimony or neighbor-joining method.

The evolutionary histories of these clusters were traced by ancestral state reconstruction using maximum parsimony and maximum likelihood (fig. 2) models.

The phylogenetic reconstruction and the topology of the MCC trees were compared with the previous studies by the current authors using maximum parsimony approaches (unpublished data).

The amino acid changes that occurred in the positively selected sites were inferred using maximum parsimony by Mesquite [ 55].

Phylogenetic analysis was performed by MEGA 4.0 [ 38], using Maximum Parsimony (MP) and Neighbour-Joining (NJ) based on p-distance values.