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These residues were subsequently tested by using different docking spheres.
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To further validate this approach, we generated several hundred poses of GPI using different docking programs and then scored them by calculating CSPs and then comparing them to experiment.
Molecular docking simulations were carried out by using two different docking algorithm implemented in CDOCKER (flexible docking) and AutoDock programs (rigid docking).
Several molecular docking tools, using different approaches, have been developed [1].
For such a tool, it is at stake to evaluate its performance using different homology modeling and molecular docking methods.
The idea is content streams in "passively", using different skins or "themes" when the phone is docked.
The difference between the two sets arises either from choosing different docking score thresholds between predicted active and inactive chemicals or from using different scoring functions.
Vina uses a different docking algorithm with a gradient optimization method in its local optimization procedure [4].
Regarding the sampling aspect, protein flexibility could be partially considered by using ensemble docking or induced-fit docking strategies.
The potential anti-angiogenesis targets of Lenalidomide derivatives were virtual screened on Auto-Dock 4.0 by using reverse docking method.
Additionally, molecular docking of compounds explored the binding affinity of highly active and least active compounds with its receptor by using GOLD docking suit [12].
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