Lastly, paternally and maternally expressed genes can be distinguished by their sequence conservation patterns in coding and noncoding sequences.
For a slightly smaller value of μ (= 0.013), however, the phylogeny reveals the existence of two sequence classes (two quasi-species), which are characterized by their distinct sequence patterns.
This result supports the notion that the G-parasite forms a distinct quasi-species from that of the C-catalyst, which have been indicated by their distinct sequence pattern revealed by the phylogeny.
The data support the conclusion that effects of berenil on gene expression in yeast cells can be explained by sequence patterns discovered by in vitro binding experiments.
The second type is a sequence-based cluster in which sequ-seqs are related by certain sequence patterns.
Second, is the X chromosome of drosophilids characterized by particular sequence patterns, different from those found in the autosomes?
The DSE was initially characterized by conserved sequence patterns downstream of the 3'-processing site, resulting in estimated consensus sequences of UUUUCACUGC [ 6], GUGUUG [ 7], and CAYUG [ 8].
A number of successful methods have been developed for predicting ligand binding sites by finding characteristic sequence patterns (Andreini et al., 2004; Passerini et al., 2006; Shu et al., 2008; Sigrist et al., 2002).
This is likely to be due, at least in part, to the high false positive rate of ESE identification compared to the other splice regulatory elements that are identified using positional information, rather than by matching to sequence patterns alone.
Therefore, we infer that the large number of genes in subgroup II-2 might be closely related to the diversification of development characteristics of land plants by altering their sequence and expression patterns.
