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Therefore, species are sequentially included by their annotation levels.
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Motifs are are shown both by their numerical identifiers (PFM number) and by their annotation (PFM annotation).
However, for a few genes that scored greater than +/−2 from the mean, we conducted a manual review to assess the overall annotation levels by enumerating available gene characteristics possibly explaining the discrepancy between evaluator ratings and computational predictions.
We found a similar relationship between HCS, LCS and RPS when looking at how specific the shared GO annotations were as measured by their levels in the GO hierarchy (Supplementary Fig. 5).
This increased the annotation level by 1736 sequences.
The concept of metabolite annotation comprises mass spectral annotation and biological metadata annotation including description of actual experimental conditions that help unravel the biological role of metabolites by their changes in levels in response to genetic and environmental perturbation [ 28, 29].
How were they analyzed: by their RefSeq annotation?
Differentially regulated TFs (See Table 3) were identified by their GO annotation.
The first subprotocol was responsible for splitting the ChEMBL data by their target annotation.
Those loci which had a 5′ UTR reported by only FGenesH retained their annotation as the best current annotation.
Many of these modules are consistent with or supported by their functional annotations or their previously known involvement in cancer.
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