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Mutation in NRY STRs was modeled by the stepwise mutation model (SMM).
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Many of the SSR loci used by us do not appear to mutate in accordance with the stepwise mutation model in our material (not shown).
In total, 41 unique multilocus genotypes were identified (AZK: 14, COQ: 27) by using the Assign Clones function and the Stepwise Mutation Model for calculating the interindividual distances in GenoDive.
The simplest microsatellite model is the stepwise mutation model (SMM) proposed by O hta and K imura (1973), which states that the length of the microsatellite increases or decreases by 1 repeat unit at a rate independent of the microsatellite length.
RST was used to account for the mutational distances among alleles under the stepwise mutation model [ 42].
Slatkin R ST assumes that microsatellites evolve according to the stepwise mutation model in which novel alleles are created either by deletion or addition of a single repeated unit of microsatellite that has equal probability µ/2 in both directions (22 ).
According to the Stepwise Mutation Model (Balloux and Goudet [2002]; Hardy et al. [2003]), Rst is larger than Fst for microsatellites mutations.
Provided microsatellites evolve under the stepwise mutation model [71], [72], mean d2 should reflect genetic distance between parental genomes.
A corollary of the stepwise mutation nature of microsatellite mutations is the fact that we can use microsatellite variability to estimate the timing of evolutionary events.
The Brownian motion approximation of the stepwise mutation model was applied to Y-chromosome microsatellites.
Runs were performed using both the stepwise mutation model and the infinite allele model.
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