Sentence examples for by the source databases from inspiring English sources
Each Pubmed ID was associated with unique and valid interaction types and experimental methods as provided by the source databases.
The aggregated information comprised all the supporting evidence captured by the source databases using the PSI-MI controlled vocabulary (14).
In this sense, the aGEM Platform cannot go beyond the limits imposed by the source databases, so the statistical analysis relies on their efficient working practices.
The information on the interaction type and detection method is captured by the source databases using the PSI-MI (27) controlled vocabulary, and associated with each interaction record.
The iRefWeb resource (http://wodaklab.org/irefweb) provides details on the consolidation process, and views of the full original records as annotated by the source databases (36).
Despite the standards prescribed and adhered to by the source databases, extensive manual curation was required to remove inconsistent interaction type or experimental method descriptions for the same Pubmed ID across multiple databases.
Some cases for which open full texts were found they were discarded from the sample altogether, if it was obvious that the item was not a peer reviewed scholarly article or that it was misclassified by the source database and clearly belonged to another discipline.
Although not taken into account when matching reactions, the direction of a reaction and the compartment(s) as indicated by the source database are shown in a C2Card.
To prevent this, each Pubmed ID supporting an interaction was first associated with unique experimental methods and interaction types as provided by the source database.
In cases where a valid interaction detection method was not specified by the source database, the interactions are assigned to 'unknown' method and consequently given a poor score.
Gene product details are supplied by the source database and include the symbol, full name, synonyms and database ID; if a sequence is available, this will be displayed along with information parsed from the FASTA headers.
