Sentence examples for by the scoring function from inspiring English sources

Analogously, 18.73% of the proposed TFs perturbed in the redesigned TRNs were contained in the list of observed altered TFs for TRV (Figure 5A, lower panel; bootstrap test, P < 0.001), and this result remains significant independently of the gene set weighted by the scoring function.

The amount of pheromone deposited directly depends on the solution quality, assessed by the scoring function.

The normalization was based on the equation (V = V_{0} /left[ {left( {M_{text{L}} + M_{text{R}} } right)/2} right]), where (V_{0}) is the binding energy calculated by the scoring function for each protein ligand complex, (M_{text{L}}) is the average binding energy of each ligand with different proteins, and (M_{text{R}}) is the average binding energy of each protein with different ligands.

Fig. 4A also shows the strongest predictions of new orphan interactions provided by the scoring function (filled green circles).

The bottom of the folding funnel may even be populated with non-native states predicted to be native by the scoring function, with the true native states higher in calculated energy but perhaps with error bars overlapping with the incorrectly predicted native states.

The alignments were then scored by the scoring function defined in Section 2.3.

There is a scoring function (such as the mean or the median), and a consensus ranking is obtained by applying the scoring function to each candidate's scores.

For simplicity, fold recognition or template-based modeling by using the scoring function with 5 terms is called FR-t5, while the method that uses the scoring function consisting of the three terms, sequence profile, secondary structure, and hydrophobic score is denoted as FR-t3.

Hence, amino acids situated to the left in the score plot in Figure 3b were scored highly by the scoring functions and appeared frequently in the 1540 peptides.

Ligand binding in the receptor cavity was evaluated by the scoring functions of the LibDock score.

Thus, in these entries, the near-native models will be selected based only on their contact area without ranking of the complex models by the scoring functions.