Here, we repeated the same evaluation procedure by using the same benchmark, the protein-protein docking benchmark 2.0 established by the ZDOCK team [ 27], but recollect the homologue set for each query protein from a newer version of sequence databases (Oct . 10 , 2008
Since both ANN types have been proclaimed superior by different investigations even for the same benchmark problems, we shall first show that the main reason for this ambiguity lies in the static and rather poor comparison methodologies applied in most earlier works.
However, even if using such a stringent criterion on the same benchmark dataset by the jackknife test, the overall absolute true success rate achieved by iLoc-Euk was 5535/7766 = 71.27%.
As we can see from the table, the overall accuracy Acc achieved by iEzy-Drug was 91.03%, remarkably higher than 85.48%, the corresponding rate obtained by He et al. [ 110] on the same benchmark.
First, based on the sequence similarity principle, we used BLAST [ 109] to conduct the jackknife test on the same benchmark dataset as used by the iSS-PseDNC predictor.
We tested our model on the RA benchmark (Sivasubramanian et al., 2009) (we used 53 of the 54 structures in the benchmark excluding the PDB: 2AI0 case because in RA benchmark the H3 loop was uncorrectly reported as a six-residue loop) and our results are more accurate than those provided by RA, considered the best method available at present, on the same benchmark.
The MCC values were calculated by comparing the reconstructed networks with an independent benchmark network, which is the same benchmark set that was used to test the prediction performance of AraNet (Lee et al. 2010).
It also found that of the $409 million awarded by the N.C.A.A. for basketball success over the past five tournaments, nearly $179 million went to teams that failed the same benchmark.
The basic idea of benchmarking is that the same benchmark value is set for enterprises that produce the same products [20].
If two index funds have the same benchmark (like the Wilshire 5000), pick the one with the lowest expense ratio.
