Sentence examples for by the refinement algorithm from inspiring English sources

We then aligned the sequences in each cluster using the local alignment algorithm implemented in DIALIGN [ 29], followed by the refinement algorithm from MUSCLE [ 30].

Therefore, the improvement brought by the refinement algorithms is due to the use of phylogenetic information rather than the averaging effect of trees.

However, with the history reconstructed by FastML under random orthology assignments, the refinement algorithm only improves slightly over the base algorithm.

The refinement algorithm is given below.

(From left to right) Subset of iterations during the refinement algorithm.

As stated above, for completely random data, we cannot save anything using the refinement algorithm.

Significant improvement was observed when applying the refinement algorithm once as compared with no refinement.

As shown in Section 3, the improved base-pairing probability matrices by the iterative refinement algorithm made the prediction accuracy much elevated, especially for short sequences.

The probability distribution produced by the iterative refinement algorithm can be regarded as a mixture of the probability distribution for each level p of the preceding prediction of pseudoknot-free structures, which can represent a wider space of the distribution than the individual distribution of pseudoknot-free structures.

These two sources of error were acknowledged by Tsur et al. (2005), who briefly described a heuristic approach to account for 'shadows' (modifications that are misplaced by a PTM search engine), and later by the same group in the PTM refinement algorithm PTMFinder (Tanner et al., 2008).

In addition, it decreases the communication overhead and improves data locality by making use of a data partitioning scheme offered by the Parallel Delaunay Refinement algorithm (PDR).