Sentence examples for by the random addition from inspiring English sources
Trees were generated by the random addition (ten replicates) of sequences from the alignment described above.
The Maximum Parsimony tree was obtained using the Subtree-Pruning-Regrafting (SPR) algorithm (page 126 in [ 21]) with search level 1 in which the initial trees were obtained by the random addition of sequences (10 replicates).
The MP tree was obtained using the Subtree-Pruning-Regrafting (SPR) algorithm with search level 1 in which the initial trees were obtained by the random addition of sequences (10 replicates).
Albergante et al. call this property Buffered Qualitative Stability (BQS): the network is qualitatively stable because its state does not change when the activity of particular regulatory links in the network changes, and it is buffered against its stability being compromised by the random addition of new links.
These functions are defined by the successive random addition algorithm using the midpoint displacement (SRMD) technique [17].
The initial tree topology was constructed by random addition, the stopgen and stoptime parameters were both set to 10,000,000 and search termination settings were set at default values.
For maximum parsimony (MP) 1,000 bootstrap replicates were done with close neighbor interchange (CNI, level 1) and initial trees for the CNI search by random addition trees (10 replications) in Mega4.
Maximum-parsimony trees were obtained by 1,000 random addition heuristic search replicates without the branch-swapping option.
The initial tree for the CNI search was created by random addition for 10 replications.
The probability of feedback creation by random addition of an edge in real GRNs was computed by trying all the possible edge insertions between the TFs and taking the ratio of insertions that form long feedback loops over the total number of insertions.
Affinity maturation was then achieved by random addition of residues flanking the minimal binding sequence and by selection of new α-bungarotoxin binding peptides on the basis of their dissociation kinetic rate.
