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The intermediate data that is generated by the mapper is partitioned into units as well and ordered by the partition function to be ready for the reduce phase.
The values taken by the partition function indicate that the sample of positive instances of GC is indeed biased, and biased samples do not as a general rule lend much support to an hypothesis.
Besides improving the reaction conditions, the stringency of primer hybridization can be distinctly improved by computer based sequence prediction algorithms based on the thermodynamic stability of DNA hybrid a described by the partition function of the hybridization reaction.
For a fixed target string Y, the probability, Pr[ F| Y, X, k], is the weighted ensemble of all possible length- k generators that are feasible for Y, normalized by the partition function Z X kk ).
Here, all interactions with one site are allowed and interaction site accessibility is calculated by the partition function of the structure ensemble (Bompfünewerer et al., 2008; Busch et al., 2008; Mückstein et al., 2006, 2008; Richter et al., 2010).
Similarly, the suboptimal alignments (determined by variations of the Temperature parameter) generated by the partition function of Probalign, might as well improved the ability of this program to deal with sequences with non-conserved terminal extensions [ 8].
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For each configuration of all the nodes, the possibility of that configuration is further determined by the potential energy function by dividing the partition function as Equ. 1 and Equ. 2, where u and h represents all the possible configurations of both viable and hidden units.
In principle, ΔG E can be determined experimentally by measuring the partition function in the absence of an agonist (i.e., ΔG E ≡ −RTln(f(0))).
Similar to ΔG E, ΔG D can be determined experimentally by measuring the partition function both in the absence of and at saturating concentrations of the agonist (i.e., ΔG D = RTln(f/f(0))) (Zhang et al. 2015).
The algorithm starts by precomputing the partition function restricted to each substructure occurring in the target structure, and then performs a series of recursive stochastic backtracks, using precomputed values to decide on the probability of each alternative.
The overwhelming impression made by data on the partition function is that it is highly unlikely for GC to fail for some large n.
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by the hashing function
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