Sentence examples for by the normalization procedure from inspiring English sources

But it is interesting to note that almost all those techniques are affected by the weights assigned to the considered selection criteria and also by the normalization procedure adopted to make the elements of the decision matrix comparable.

Given that adjacent probes within a single gene may differ in signal with a standard deviation >1 (on a log2 scale) [35] we have the option to create a very conservative dataset by selectively removing probes using the results of the gcRMA algorithm [11] run on the original raw dataset, in comparison to the dataset returned by the normalization procedure described above.

This could reflect a potential differential stability as compared to the nuclearly-encoded transcripts under conditions of growth arrest, and would be highlighted by the normalization procedure.

After normalization, six copies of desmin and five copies of EgCAD2 were recovered, demonstrating that redundancy in the library was drastically reduced by the normalization procedure.

Standardization is intended to account for some gross disparities in the expression levels of probes coming from different data sets which cannot be handled by the normalization procedure.

The dynamic range of the expression changes is expected to be muted by the normalization procedure, and this is demonstrated for specific transcripts below.

By taking into account the normalization procedure in Equation 10, the equation can be boiled down to α ( H ) = μ ∑ d = 0 D - 1 d IS e d ∑ p ∈ Grp ( d ) | H p | 1, (14) s.t.

We calculate the sequence similarity matrix T s by using the R Biostrings package and the normalization procedure proposed by Bleakley and Yamanishi [2]: T_{s} = frac{{SWleft( {g,g^ right)}}{{sqrt {SWleft( {g,g} right)} sqrt {SWleft( {g^,g^ right)} }}, (1 where SW means the original Smith Waterman similarity score.

44 The only exception was MtAqp-5, which showed increased sequence read coverage compared to qPCR data, probably caused by biased PCR amplification during the normalization procedure.

MA-plots of the spot signals from 48 pins (encoded by different colors) before and after the normalization procedure are shown in Additional File 1 (exemplified by time point 12 h after CRH treatment).

The normalization procedure of RC by GC content (or by control RC) is described below.