Sentence examples for by the multiple sequence from inspiring English sources

Proteins are clustered by the multiple sequence alignment program ClustalW 1.83, to bring clearly similar proteins into proximity in the visualization [3].

We mapped the positions of introns in B. mori CCEs by the multiple sequence alignment.

Its occurrence was also not supported by the multiple sequence alignment data (data not shown).

Alignments were performed by the multiple sequence alignment program ClustalX [ 16] using default settings.

Unaligned ends and columns that contained more than 70% gaps were removed by the multiple sequence alignment editor BELVU [ 106].

The sequences were aligned by the multiple sequence alignment program ClustalX, and the alignment file was used for predicting the phylogenetic distances of different proteins using MrBayes.

Sequences of full-length HA genes were aligned by using the multiple sequence comparison by log-expectation (MUSCLE) method (www.ebi.ac.uk/Tools/muscle/index.html) and were then subjected to distance matrix calculations (FastME; 12 ).

These sequences were aligned with Clustal X 2.0 [42] by using the multiple sequence alignment.

All sequences were aligned by using the multiple sequence alignment editor ALIGN-IR (LI-COR), and consensus sequences for every gene sequenced were determined.

Data for >3 clones sequenced in both directions were compared by using the multiple sequence alignment function in Lasergene version 7.2 software (DNASTAR, Madison, WI, USA) (31, 32 ).

Problems were corrected either by revision of the multiple sequence alignment, or by manual adjustments of the model, guided by the crystal structures.