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Two optimal weights for the strong- and weak-clue sets, 7.77 and 0.001, were ultimately obtained by the default settings on KGG.
The substitution model was defined by the default settings with two exceptions: in the first analysis substitution rates were set to 'invgamma', and in a second analysis, a covarion model [ 48, 49] was applied to assess the effect of coevolving sites on the estimation process.
No starting topology was defined and the program was set to run until no significant topology improvement (as defined by the default settings) was found after 1000000 generations.
For PS, cNrGA, and HCQPSO, they are initialized by the default settings as in their papers.
Sequences were identified by the web-based MegaBLAST algorithm in the NCBI nucleotide nr/nt database by the default settings.
Sequencing raw data was processed with gsRunProcessor (software release 2.0.00.20) using standard quality filtering and trimming as defined by the default settings.
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Facebook encourages widespread sharing by making the default settings for an adult's Facebook page public to all.
One of the model was obtained by applying the default settings of CRF++.
They can be altered prior to undertaking a review if such a change is justified by changing the default settings in the Eco Evidence desktop analysis software (e.g., Grove and others 2012).
Genetic relationships among breeds and levels of gene flow and admixture were evaluated through the model-based clustering algorithm implemented in the software ADMIXTURE v. 1.22 [ 15] by applying the default settings.
We used a double-Gamma function provided by SPM [43], with the default settings, as the HRF.
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by the parameter settings
by the instrument settings
by the default maps
by the model settings
by the user settings
by the amplification settings
by the default values
by the permission settings
by the geometry settings
by the ventilator settings
by the practice settings
by the default browsers
by the system settings
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