Sentence examples for by the cross_match program from inspiring English sources

Vector sequences were removed by the cross_match program.

To detect the elements missed by the program, the intact elements sequences and LTR sequences of all 27 identified PbrCassandra elements were used as queries to scan the whole genome sequences of pear by using the "cross_match" program with default parameters.

In this study, in order to annotate the Cassandra elements with multiple LTRs, not only the LTR sequences but also the intact elements sequences of all 27 PbrCassandra elements initially identified were used as queries to scan the whole-genome sequences of pear by using the cross_match program with default parameters.

The full-length sequences were finished by trimming the vector-derived sequences from both ends using the cross_match program.

Possible contaminants (plasmid DNA, sequences with similarity to vectors and other contaminants) were discarded using the Cross_match program (www.phrap.org).

All sequences were screened for vector contamination using the cross_match program from the Phred/Phrap package [39] against NCBI's UniVec database.

The Cross_Match program is used to mask contaminant and vector (pBluescriptSK-) sequences.

The cross_match program was used for this purpose with minmatch 12 and minscore 20 [ 31].

Vector screening was performed using the Cross_match program with Codoncode InterPhace software.

The cross_match program is used to identify and mask vector (pBK-CMV) and contaminant sequences, such as E. coli, chloroplast and mitochondria sequences.

From the 5'-end sequences, vector-derived sequences and low-quality regions (Phred quality value < 30) were trimmed using a combination of the cross_match program http://www.phrap.org and the phred program [ 38].