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For the remaining phenotype data on average 89 and 131 genes were found for phenotypes of each experiment, respectively by the correlation methods and by PhenoLink.
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a displays image at τ=−1.2, the location specified by the correlation method.
Therefore, the set of 36 parameters found by the correlation method is a superset of the 2 parameters selected by the eigenvalue and the orthogonal method.
The sets of parameters removed by the eigenvalue and orthogonal method have only kb7 in common with the parameters selected by the correlation method.
These drawbacks cause the differences between the number of unidentifiable parameters found by the correlation method as compared to the orthogonal and eigenvalue method.
In contrast, the first 13 parameters ranked by the correlation method need to be fixed to obtain a smallest eigenvalue larger than the threshold ϵ = 10-4.
Based on a consideration of the normal vibrational modes of the ionic polyhedra and the neutral water molecules, we have carried out a factor group analysis by the correlation method to determine the symmetry species of all Raman-active modes.
From Figure 5 it is apparent that fewer parameters need to be fixed than those selected by the correlation method to obtain a positive definite Hessian matrix or, equivalently, an identifiable model in all examples.
Based on a consideration of the normal vibrational modes of the free ammonium and carbonate ions and the neutral water molecule, we have carried out a factor group analysis by the correlation method to determine the symmetry species of all Raman-active modes.
For phenotypes of strains assessed by three API tests (D-arabitol, D-raffinose and Methyl-glucopyranoside) no gene was found to be related by any of the correlation methods.
The rows in Figure 4 are ordered according to mean AUC and the ranking is therefore identical to that in the multifactorial bar graph in Figure 3. Top performers on average are the correlation methods by Pearson, Spearman and Kendall, with the corrected Spearman method (SPEARMAN-C) achieving the highest mean AUC.
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