Sentence examples for by the clover algorithm from inspiring English sources

NF-κB sites for study were selected by the CLOVER algorithm of Motifviz (http://biowulf.bu.edu/MotifViz/), which uses the JASPAR database (http://jaspar.genereg.net/) for its binding matrices.

Sequences obtained were finally scanned for the presence of specific functional DNA motifs by using the Clover algorithm and the library of motifs provided by TRANSFAC® Professional 2009.2.2

To this end we carried out a supervised motif analysis using the Clover algorithm [ 27] (Table 2).

TFBS enrichment analysis was conducted by scanning the promoter sequence of the genes in the analyzed modules for enrichment of known transcription factor binding motifs using the Clover algorithm [ 52].

The motifs of the listed TFs are significantly enriched with p < 0.01 in putative enhancer regions compared to random sequences drawn from PrL set, chr19 and promoter 5 kb regions using the Clover algorithm [ 27] with TF binding matrices reported in PSSM column Raw scores from Clover algorithm are reported.

Clover algorithm [ 27] was used to screen a set of given DNA sequences against transcription factor weight matrices, and assess whether any motifs are over- or under-represented in the given sequences by comparing to random sequences drawn from chr19 (42.7% C + G) and 5 kb upstream of TSSs (45.7% C + G).

Pass on by the clover patch.

In addition, staphylococci were tested for beta-lactamase production by the "clover-leaf" method as described by Bryan and Godfrey [ 14].

In addition, all isolates of staphylococci were examined for betalactamase production by the "clover-leaf" method as described by Bryan and Godfrey [ 11].

All isolates of staphylococci were in addition examined for β-lactamase production by the "clover-leaf" method as described by Bryan and Godfrey [ 8].

Also, the miniaturized size of the proposed antenna is 14 × 12 × 0.8 mm3 by utilizing the clover shaped slots.