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The magnetism in ferromagnetic materials is caused by the alignment patterns of their constituent atoms, which act as elementary electromagnets.
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Images were normalized for lane to-lane differences in mobility by the alignment of patterns obtained on multiple loadings of the 1kb DNA size marker (GIBCO-BRL, Gaithersburg, MD, USA).
The dominant alignment patterns of the cluster are identified and analyzed by the point of view of power output and efficiency.
This "frequency weighted read count" protocol provides higher weights to peptides unique to a protein family, and should improve the accuracy of protein abundance profiling by decreasing the noise created by reads with complex alignment patterns.
If a putative marker is actually a polymorphism between paralogs within a given subgenome, the expected alignment pattern would be exemplified by that shown for Category III (Fig. 3).
The ChIP alignment pattern was quite distinct for NSC-derived predictions in ESC cultures.
Based on the assumption that the 3D fold is more conserved and can be recognized by the alignment of sequences and secondary structure patterns, the template-based modeling (Das and Baker 2007; Parisien and Major 2008; Das et al. 2010; Cao and Chen 2011; Zhao et al. 2012) has shown promising achievements in RNA 3D structure predictions.
Next, the genomic sequence spanned by the two read clusters was extracted and the secondary structure and alignment pattern of the derived pre-miRNA was analysed.
Type 1: loop swapping in main multiloop accompanied by hairpin deletion in P17.1 The first type of alignment pattern is characterized by comparisons between a green sulfur bacteria Chlorobium and gamma purple bacterial RNAse P RNAs.
Type 2: hairpin swapping between P17 and P17.1 The second type of alignment pattern is characterized by comparisons between Agrobacterium tumefaciens (ASE_00018) and several Chlamydia trachomatis members.
To improve alignments, the 376 sequences were split into three groups based on their signature motif alignment pattern.
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