Sentence examples for by the alignment length from inspiring English sources

Sn2 is the raw score normalized by the alignment length excluding query ending gaps.

The sequence identity was defined as the number of identities in the alignment divided by the alignment length.

The score density, i.e. the BLAST bit-score divided by the alignment length, was used as the similarity measure.

To measure the sequence similarity between homologous proteins from the same family we used a Blast bitscore normalized by the alignment length.

Figure 4 displays the results, showing that increasing diversity, as measured by the branch length, and data, as measured by the alignment length, both improve the power of the method to detect the divergence point.

For further evaluation of candidate positions, we computed for each mapped read in a candidate region the percent identity, that is, the number of identical nucleotides (matches) in the alignment to the reference, divided by the alignment length.

Local conservation was avoided by dividing the alignment length of each aligned sequence by its total length.

The alignment coverage was defined as the alignment length divided by the length of the shorter sequence.

In conclusion, it is evident that the alignment lengths suggested by parametric simulation are too optimistic and those of nonparametric simulations too pessimistic.

If there is no structural similarity between first two models (defined as zero MaxSub score [37]), templates will be re-ranked by the greater one of two Z-scores, which are calculated based on the raw alignment score normalized by the full alignment length and the non-end-gap alignment length, respectively.

Pairwise sequence differentiation (proportion of variable sites) was calculated as the number of mismatched sites divided by the total alignment length for each alignment in a given BLASTN search.