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Likewise, four kinases (none of them of the FIKK family) possess a potential mitochondrion-targeting signal sequence, as defined by the algorithm available on PlasmoDB [ 72].
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Therefore, the symmetric CCEiCP can be efficiently solved by employing the algorithms available [26] or developing new algorithms to compute a stationary point of NLP1.
By using the algorithms available in MEGA 5, we determined the overall mean distances (number of differences and p-distance) and matrices of pairwise comparisons at both nucleotide and amino acid level, along with the respective standard error estimates (bootstrap = 1000).
In total, 1794 individual target genes were identified by these four target prediction algorithms (578 identified by two or more of the algorithms) (available on request).
The redundancy in the annotations was reduced by applying the clustering algorithm available in DAVID using intermediate stringency and default settings for the Kappa statistics.
Genomic comparisons between the available vtx-phages sequences have been performed by using the BLAST algorithm available at NCBI [ 28] and the Mauve free alignment software [ 24].
However, the mapping F is not monotone, which precludes CCEiCP from being solved by the efficient algorithms available for variational inequality problems [25].
In the case of Mendelian segregation, this probability can be easily calculated by a computer algorithm (available from the authors).
The overall transfer matrix of the helix is computed up to any desired accuracy by using the effective numerical algorithm available in the literature.
Normalized expression estimates of probe sets were computed by the robust multiarray (RMA) analysis algorithm available in the Bioconductor library AffyPLM using default settings [ 45].
The analyses of amino acid mutation at PCGs and intergenic region were performed by a custom-written algorithm (available upon request) using mitochondrial codons.
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