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A particularly efficient implementation of the described patterns is provided by the FastFlow parallel programming framework [ 22].
The paper arguments are on enabling methodologies for the design of a fully parallel, online, interactive tool aiming to support the bioinformatics scientists.In particular, the features of these methodologies, supported by the FastFlow parallel programming framework, are shown on a simulation tool to perform the modeling, the tuning, and the sensitivity analysis of stochastic biological models.
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In this respect, the FastFlow parallel programming framework [ 3], offers an important methodological approach that allows applications to be easily parallelized on a variety of multi/many-core platforms.
We ported Bowtie2 and BWA on top of the pattern-based FastFlow parallel programming framework for C++.
In the picture, all the grey boxes as well as all the code needed for synchronization and data streaming (double-headed arrows) are automatically generated by the FastFlow framework.
Many of these results are achieved by means of the FastFlow programming framework that provides a high-level of abstraction parallel programming methodology that exempt the programmer from direct management of synchronization and orchestration of concurrent activities.
Each model is described in terms of its pros and cons, and parallel implementations in the FastFlow framework are analyzed by discussing the layout of the concurrent data structures used for the efficient windows representation in each model.
Section 2 presents related work on alignment tool performance, optimisations, and benchmarking, while in Section 3 the FastFlow library for high-level parallel programming models is presented.
He thinks, pleased by the parallel.
We compare these tools to their porting onto the FastFlow pattern-based programming framework, which provides programmers with high-level parallel patterns.
Each node in the FastFlow run-time support is implemented by a POSIX (portable operating system interface for uniX) thread using a nonblocking execution model.
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