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To focus on our topics on modeling compositions, we only limited the description by taking the deviations of Ala and Val as examples in the Discussion.
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Effect size is calculated by taking the difference between the means before and after treatment and dividing it by the standard deviation of the same measure before treatment.
Standard response mean is calculated by taking the difference between the means before and after treatment and dividing it by the standard deviation of the change.
This analysis was calculated by taking the difference between the in-patient mean and the out-patient mean divided by the pooled standard deviation.
A global median absolute deviation (MAD) was computed from the gene expression values by taking the median deviation for each set of technical replicates, using either the Ct values or log2 calculated abundances.
For the response probabilities, weights were calculated by taking the standard deviation for each condition across subjects and then dividing the mean of those standard deviations by that of each condition.
The three-sigma statistical threshold criteria was calculated by taking the standard deviation derived from the normal background tissue count rate and multiplying that standard deviation by a factor of three, and then adding that number to the normal background tissue count rate [ 70, 75- 77].
The degree of mixing can be quantified by taking the standard deviation of the normalized intensity from cross-sectional confocal images at different locations in the mixing microchannel.
We quantified adaptive trends in a cell's responsiveness to the same repeated stimulus pattern by taking the standard deviation (SD) of the first 20 voltage responses, using the last 8,000 samples (time points) of each response as explained in the part I [4].
Repeatability was calculated by taking the standard deviation of the 4 measurements of each prostheses and taking the mean of those twelve values.
For the polar plot in Figure 4 figure supplement 2, we plotted the modulation to step cycle by taking the absolute deviation from the mean activity as the radius of the plot.
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