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In the first step, the algorithm is begun by taking a maximum repeat value.
The quantitative ChIP enrichments were calculated from the.wiggle files computed by MACS v1.4.2 (Zhang et al., 2008) by taking a maximum average signal over a sliding window within the 500bp upstream of the TSS both for RBf1 and RBf2 ChIP experiments.
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The expression level of an exon or intron was assessed by taking (a) the average and (b) the maximum read density across samples.
Then, we estimated, for each patient, a membership probability to each trajectory, and we assigned a unique trajectory to a patient by taking the maximum membership probability.
Each reaction in the KEGG database was assigned a score by taking the maximum BLAST score over all UniProt- Trichoderma sequence pairs, where UniProt sequence had been annotated with an EC number corresponding to the reaction.
Connectivity maps were generated separately for the two seed regions in each hemisphere and combined into a single connectivity map by taking the maximum from the two connectivity maps on a voxelwise basis.
The inclusion of a second seed located in the LGN and the combination of the tractography data from the two seed regions by taking the maximum observed connection probability on a voxelwise basis allows a robust delineation of the entire optic radiation.
The frequency is found by taking the maximum frequency value from a plot of frequency versus power spectrum.
Hybrid alignments achieve a local alignment by taking the maximum of the log-odd ratios at each possible termination point, and hence do not need to deal explicitly with the termination probabilities of the HMMs.
The systolic arterial pressure series was obtained by taking the maximum of the pressure signal within a short interval following a QRS detection.
We have already determined the upper bound on F as a function of M. Thus, we can obtain an upper bound on F as a function of HT by taking the maximum value of the upper bound over the range of possible values of M allowed under the results of Rosenberg and Jakobsson (2008) for a given value of HT.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com