Sentence examples for by similarity analyses using from inspiring English sources

Functional annotation was performed by similarity analyses, using public databases and InterProScan analysis [81].

This common recombination can be confirmed by similarity analyses using programs such as SimPlot (see Figure S2).

Similarity analyses using BLASTP (BLOSUM62 matrix), iterative PSI-BLAST and BLASTN searches were performed by selecting default parameters against all available sequences in the non-redundant database available on the NCBI website [ 32, 38].

The clustered sequences were then annotated based on similarity searches performed by batch BLAST analyses using the Greengene interface.

Therefore, we examined the conservation of structural similarity between the subunits by profile HMM analyses using the HHSearch program [26].

However, by sequence similarity searches and domain analyses using Prosite (Sigrist et al., 2010) we were unable to identify a conserved HRDC domain.

To detect patterns of protein similarities, we conducted "repertoire-wide" dot-plot analyses using concatamers of var exon1 sequences ordered by isolate and 5' flanking sequence type.

Phylogenetic analyses using a variety of mitochondrial and nuclear genes places the Noronha skink among the tropical African species of Trachylepis, a position also supported by morphological similarities.

This striking shift in sequence similarity from similarity among orthologues across specimens (grey) to similarity/identity among paralogues within specimens (white) is also reflected in our sequence section-specific phylogenetic analyses using ML.

The sequence similarity methods and the statistical analyses used are entirely appropriate.

The time series is analysed using Similarities Profiles (SIMPROF) tests and associated methods.