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As the hybridization was performed in two technical replicates and genes could be interrogated by several probe sets, we designated a gene as expressed when it was present at least half of the time it was interrogated.
If a gene is represented by several probe sets, the moderated t-statistic with the highest absolute value is used to represent the moderated t- statistic for that gene.
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In the HNSCC series, there was a good correlation between several probe sets and RNU43 measured by RT PCR, but RPL3 was not associated with prognosis.
Transcriptome analysis revealed that several probe sets coding for MAP kinases were induced by SnTox3.
When several probe sets with the best extension were available, the one with the highest median value was retained.
Several probe sets may be annotated as one gene and each probe set has two repeats.
The Affymetrix Genechip HG-U133 Plus 2.0 typically contains several probe sets probing the same gene.
Several probe sets involved in proline accumulation were also classified in these clusters (detailed hereafter).
In case several probe sets share the same gene symbol, the probe set with the largest mean expression over all samples was used as representative for that symbol.
Several probe set algorithms were available for processing microarray data.
At present, there are several probe set algorithms available for analysis of microarray data.
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