The other three alternative signature strings are calculated in a similar way, by setting the lengths of the first and last exons to 90 and 840, 30 and 870, 90 and 870 respectively.
By mentally setting the length of this task from a hasty "I need to push this tonight" to a more effective "lets plan this out and take more time if necessary" the end result was much more robust.
A maximum signal is detected only when both path length differences match, so that by setting the path length difference of the external interferometer one sets the imaging depth within the sample.
By setting the max length threshold L, the section will be deleted if its length is smaller than L pixels.
Similar to the key-independent JPEG2000 PBHash, sensitivity can be controlled by setting the hash length accordingly.
The mapping tool was configured to return all alignment hits by setting the seed length to 28 bp.
CSMinfinder allows us to output longer regions by setting the minimum length threshold to a higher value.
Subsequently, the hierarchical genome-assembly process (HGAP) pipeline [ 16] was used to correct the sequencing errors by setting the seed length to 1500 bp for constructing preassemblies.
We noticed on real data that there are some binding regions with jagged tag profiles, which will poison binding site detection, so SeqSite filters those short tag clusters by setting the cluster length threshold (100-nt).
First, a 2X magnification of the sample field at the spectrometer slit was achieved by setting the focal length of L3 and L4 equal to 50 mm, and that of L2 and L5 equal to 100 mm; with a pixel size of 20 µm, this resulted in a lateral resolution of 10 µm.
