Sentence examples for by sequence comparison using from inspiring English sources

The analysis of sequence redundancy was performed by sequence comparison using local BLASTN through a clustering system running under an alpha version of Biopipeline® and by using the Cap3 contig assembly program [ 22].

Markers not showing size polymorphisms were further analyzed for species-specific RFLPs by sequence comparison using Sequencher software (Gene Codes Corporation), the TCAG program available as part of the Biology Workbench software utilities provided at the San Diego Supercomputer Center [ 37], or with the SNP-RFLPing program [ 38].

Rodent species were determined by sequence comparisons using the BLAST algorithm (www.ncbi.nlm.nih.gov).nih.gov

The identity of these sequences was ascertained by sequence comparisons using the program BlastN of the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/).nih.gov/

The identity of these sequences was ascertained by sequence comparisons using the program BLAST Basic Local Alignment Tooll) of the National Center for Biotechnology Information (http://blast.ncbi.nlm.nih.gov/) By IFAT, four cats/samples tested positive for Giardia duodenalis cysts and one cat for Cryptosporidium sp. oocysts.

Annotation of COG and KEGG pathways was performed by sequence comparisons using BLASTX algorithm against Cluster of Orthologous Groups database and Kyoto Encyclopedia of Genes and Genomes database with an E-value threshold of 10-5.

In this approach protein kinase sequences were clustered using scores provided by full-length sequence comparison using BLAST and maximal linkage clustering.

Nucleotide and amino acid sequences were analysed by pair-wise sequence comparison using the Kimura distance method.

The deduced amino acid sequences of the CCD proteins were aligned by a multiple sequence comparison using the log-expectation (MUSCLE) alignment tool (http://www.ebi.ac.uk/Tools/msa/muscle) with the default parameters [ 19].

A group of homologous proteins (protein family) was built by all-against-all protein sequence comparison using BLASTP followed by Markov clustering (MCL) [ 94] with an inflation factor of 1.2 using MCLBLASTLINE (http://micans.org/mcl/).org/mcl/

A group of orthologous proteins was built by all-against-all protein sequence comparison using BLASTP followed by FastOrtho with default parameters (http://enews.patricbrc.org/fastortho/), which is a reimplementation of the OrthoMCL program [ 84].